init: tested on hangtuah to cloud
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mario
358
services/dicom_sender.py
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358
services/dicom_sender.py
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"""
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DICOM sender service - Implements storescu functionality using pynetdicom.
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"""
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import os
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import glob
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import pydicom
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import shutil
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from pydicom.dataset import Dataset
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from pynetdicom import AE, StoragePresentationContexts, evt
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from config import settings
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from utils.logger import main_logger as logger
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from utils.error_handler import DicomStoreError, dicom_retry
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from utils.dicom_utils import create_directory_if_not_exists
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class DicomSender:
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"""
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Class to perform DICOM C-STORE operations to send DICOM studies to a destination PACS.
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"""
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def __init__(self, pacs_config=None):
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"""
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Initialize DicomSender with PACS settings.
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Args:
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pacs_config (dict, optional): Destination PACS configuration dict containing host, port, aet
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"""
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self.pacs_config = pacs_config or settings.DESTINATION_PACS
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self.ae = AE(ae_title=settings.SOURCE_AET)
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# Add storage presentation contexts (all standard transfer syntaxes for each SOP class)
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for context in StoragePresentationContexts:
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self.ae.add_requested_context(context.abstract_syntax)
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logger.info(f"DicomSender initialized with destination PACS: {self.pacs_config['aet']}@{self.pacs_config['host']}:{self.pacs_config['port']}")
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def _remove_dicom_files(self, directory):
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"""
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Remove all DICOM files in the specified directory.
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Args:
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directory (str): Path to the directory to remove files from.
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"""
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try:
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if os.path.exists(directory):
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shutil.rmtree(directory)
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logger.info(f"Removed DICOM files from directory: {directory}")
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except Exception as e:
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logger.error(f"Failed to remove DICOM files from {directory}: {str(e)}")
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@dicom_retry(exception_types=(DicomStoreError, ConnectionError))
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def send_study(self, study_path):
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"""
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Send all DICOM files in a study directory to the destination PACS.
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Args:
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study_path (str): Path to study directory containing series subdirectories with DICOM files
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Returns:
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dict: Summary of store operations with counts and status
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"""
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logger.info(f"Sending all DICOM files from study: {study_path}")
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# Check if study directory exists
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if not os.path.exists(study_path) or not os.path.isdir(study_path):
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error_msg = f"Study directory does not exist: {study_path}"
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logger.error(error_msg)
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raise DicomStoreError(error_msg)
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# Find all DICOM files in the study directory (recursively)
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dicom_files = []
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for root, _, files in os.walk(study_path):
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for file in files:
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if file.endswith('.dcm'):
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dicom_files.append(os.path.join(root, file))
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if not dicom_files:
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logger.warning(f"No DICOM files found in study directory: {study_path}")
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return {
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'success': False,
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'total_files': 0,
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'successful_sends': 0,
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'failed_sends': 0,
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'error': 'No DICOM files found'
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}
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logger.info(f"Found {len(dicom_files)} DICOM files to send")
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# Create association
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assoc = self.ae.associate(
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self.pacs_config['host'],
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self.pacs_config['port'],
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ae_title=self.pacs_config['aet']
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)
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result = {
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'success': False,
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'total_files': len(dicom_files),
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'successful_sends': 0,
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'failed_sends': 0,
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'failures': [],
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'study_path': study_path
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}
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if assoc.is_established:
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try:
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logger.debug(f"Association established with {self.pacs_config['aet']}, sending DICOM files")
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for file_path in dicom_files:
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try:
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# Read the DICOM file
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dataset = pydicom.dcmread(file_path, force=True)
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# Get identifying information for logging
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sop_instance_uid = getattr(dataset, 'SOPInstanceUID', 'Unknown')
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series_instance_uid = getattr(dataset, 'SeriesInstanceUID', 'Unknown')
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# Send the dataset
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status = assoc.send_c_store(dataset)
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if status and status.Status == 0x0000: # Success
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logger.debug(f"Successfully sent: {os.path.basename(file_path)}")
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result['successful_sends'] += 1
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else:
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logger.error(f"Failed to send {os.path.basename(file_path)}: {status}")
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result['failed_sends'] += 1
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result['failures'].append({
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'file': file_path,
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'sop_instance_uid': sop_instance_uid,
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'series_instance_uid': series_instance_uid,
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'status': str(status) if status else 'Unknown error'
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})
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except Exception as e:
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logger.error(f"Error processing file {file_path}: {str(e)}")
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result['failed_sends'] += 1
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result['failures'].append({
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'file': file_path,
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'error': str(e)
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})
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# Update success flag based on results
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if result['successful_sends'] == result['total_files']:
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result['success'] = True
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elif result['successful_sends'] > 0:
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# Partial success
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result['success'] = True
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logger.warning(f"Partial success: {result['successful_sends']}/{result['total_files']} files sent")
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logger.info(f"C-STORE completed: {result['successful_sends']}/{result['total_files']} files sent")
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# Remove DICOM files after sending
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self._remove_dicom_files(study_path)
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except Exception as e:
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error_msg = f"Error during C-STORE operations: {str(e)}"
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logger.error(error_msg)
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result['error'] = error_msg
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raise DicomStoreError(error_msg)
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finally:
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# Release the association
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assoc.release()
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logger.debug("Association released")
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else:
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error_msg = f"Association rejected, aborted or never connected to {self.pacs_config['aet']}"
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logger.error(error_msg)
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result['error'] = error_msg
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raise DicomStoreError(error_msg)
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return result
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@dicom_retry(exception_types=(DicomStoreError, ConnectionError))
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def send_series(self, study_uid, series_uid, base_dir=None):
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"""
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Send all DICOM files in a specific series to the destination PACS.
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Args:
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study_uid (str): StudyInstanceUID
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series_uid (str): SeriesInstanceUID to send
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base_dir (str, optional): Base directory where DICOM files are stored. Defaults to settings.DICOM_STORE_DIR.
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Returns:
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dict: Summary of store operations with counts and status
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"""
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base_dir = base_dir or settings.DICOM_STORE_DIR
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series_path = os.path.join(base_dir, study_uid, series_uid)
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logger.info(f"Sending DICOM files from series: {series_uid}")
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# Check if series directory exists
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if not os.path.exists(series_path) or not os.path.isdir(series_path):
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error_msg = f"Series directory does not exist: {series_path}"
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logger.error(error_msg)
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raise DicomStoreError(error_msg)
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# Find all DICOM files in the series directory
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dicom_files = glob.glob(os.path.join(series_path, '*.dcm'))
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if not dicom_files:
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logger.warning(f"No DICOM files found in series directory: {series_path}")
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return {
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'success': False,
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'total_files': 0,
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'successful_sends': 0,
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'failed_sends': 0,
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'error': 'No DICOM files found'
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}
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logger.info(f"Found {len(dicom_files)} DICOM files to send")
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# Create association
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assoc = self.ae.associate(
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self.pacs_config['host'],
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self.pacs_config['port'],
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ae_title=self.pacs_config['aet']
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)
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result = {
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'success': False,
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'total_files': len(dicom_files),
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'successful_sends': 0,
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'failed_sends': 0,
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'failures': [],
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'series_path': series_path
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}
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if assoc.is_established:
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try:
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logger.debug(f"Association established with {self.pacs_config['aet']}, sending DICOM files")
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for file_path in dicom_files:
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try:
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# Read the DICOM file
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dataset = pydicom.dcmread(file_path, force=True)
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# Send the dataset
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status = assoc.send_c_store(dataset)
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if status and status.Status == 0x0000: # Success
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logger.debug(f"Successfully sent: {os.path.basename(file_path)}")
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result['successful_sends'] += 1
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else:
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logger.error(f"Failed to send {os.path.basename(file_path)}: {status}")
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result['failed_sends'] += 1
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result['failures'].append({
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'file': file_path,
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'status': str(status) if status else 'Unknown error'
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})
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except Exception as e:
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logger.error(f"Error processing file {file_path}: {str(e)}")
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result['failed_sends'] += 1
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result['failures'].append({
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'file': file_path,
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'error': str(e)
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})
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# Update success flag based on results
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if result['successful_sends'] == result['total_files']:
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result['success'] = True
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elif result['successful_sends'] > 0:
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# Partial success
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result['success'] = True
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logger.warning(f"Partial success: {result['successful_sends']}/{result['total_files']} files sent")
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logger.info(f"C-STORE completed: {result['successful_sends']}/{result['total_files']} files sent")
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# Remove DICOM files after sending
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self._remove_dicom_files(series_path)
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except Exception as e:
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error_msg = f"Error during C-STORE operations: {str(e)}"
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logger.error(error_msg)
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result['error'] = error_msg
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raise DicomStoreError(error_msg)
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finally:
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# Release the association
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assoc.release()
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logger.debug("Association released")
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else:
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error_msg = f"Association rejected, aborted or never connected to {self.pacs_config['aet']}"
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logger.error(error_msg)
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result['error'] = error_msg
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raise DicomStoreError(error_msg)
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return result
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@dicom_retry(exception_types=(DicomStoreError, ConnectionError))
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def send_file(self, file_path):
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"""
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Send a single DICOM file to the destination PACS.
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Args:
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file_path (str): Path to DICOM file to send
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Returns:
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dict: Summary of store operation with status
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"""
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logger.info(f"Sending DICOM file: {file_path}")
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# Check if file exists
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if not os.path.exists(file_path) or not os.path.isfile(file_path):
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error_msg = f"DICOM file does not exist: {file_path}"
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logger.error(error_msg)
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raise DicomStoreError(error_msg)
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# Create association
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assoc = self.ae.associate(
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self.pacs_config['host'],
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self.pacs_config['port'],
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ae_title=self.pacs_config['aet']
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)
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result = {
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'success': False,
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'file_path': file_path,
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'status': '',
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'error': ''
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}
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if assoc.is_established:
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try:
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logger.debug(f"Association established with {self.pacs_config['aet']}, sending file")
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# Read the DICOM file
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dataset = pydicom.dcmread(file_path, force=True)
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# Get identifying information for logging
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sop_instance_uid = getattr(dataset, 'SOPInstanceUID', 'Unknown')
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series_instance_uid = getattr(dataset, 'SeriesInstanceUID', 'Unknown')
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study_instance_uid = getattr(dataset, 'StudyInstanceUID', 'Unknown')
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# Send the dataset
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status = assoc.send_c_store(dataset)
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if status and status.Status == 0x0000: # Success
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result['success'] = True
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result['status'] = 'Success'
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logger.info(f"Successfully sent file: {file_path}")
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logger.debug(f"File details: Study={study_instance_uid}, Series={series_instance_uid}, SOP={sop_instance_uid}")
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else:
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result['status'] = f"Failed - Status: {status}" if status else "Failed - Unknown error"
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logger.error(f"Failed to send file: {file_path}")
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logger.error(f"Status: {status}")
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except Exception as e:
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error_msg = f"Error sending file {file_path}: {str(e)}"
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logger.error(error_msg)
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result['error'] = error_msg
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raise DicomStoreError(error_msg)
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finally:
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# Release the association
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assoc.release()
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logger.debug("Association released")
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else:
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error_msg = f"Association rejected, aborted or never connected to {self.pacs_config['aet']}"
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logger.error(error_msg)
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result['error'] = error_msg
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raise DicomStoreError(error_msg)
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return result
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