add: fastapi wrapped baru mau di tes di Gajah Mada
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api-app/README.md
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172
api-app/README.md
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# DICOM Migration REST API
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This REST API provides an endpoint to trigger DICOM study migration for a specific Accession Number.
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## Features
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- Migrate DICOM studies by Accession Number
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- Token-based authentication
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- Detailed JSON responses with operation status
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- Proper logging and error handling
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- Automatic cleanup of DICOM files after each request
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## Requirements
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- Python 3.9 or higher
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- FastAPI
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- Uvicorn
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- Dependencies from the main DICOM migration project
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## Installation
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1. Install the required dependencies:
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```bash
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cd api-app
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pip install -r requirements.txt
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```
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## Configuration
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The API uses the same configuration settings as the main DICOM migration project.
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### Authentication
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The API uses token-based authentication. Set your token using the environment variable:
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```bash
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export API_TOKEN=your-secure-token
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```
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If no token is provided, a default token will be used (not recommended for production).
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## Usage
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### Starting the API Server
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```bash
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# Start the server on default port 8000
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python run.py
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# Specify a custom port
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python run.py --port 9000
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# Specify a custom token
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python run.py --token your-secure-token
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# Enable auto-reload for development
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python run.py --reload
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```
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### API Endpoints
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#### 1. Migrate Study by Accession Number
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```
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POST /migrate/{accession_number}
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```
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**Authentication:**
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- Bearer token in Authorization header
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**Response:**
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Successful migration:
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```json
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{
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"success": true,
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"message": "Successfully migrated study for accession number: ABC12345",
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"details": {
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"study_uid": "1.2.826.0.1.3680043.9.7307.1.123456",
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"his_integration_success": true
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}
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}
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```
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Failed migration:
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```json
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{
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"success": false,
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"message": "Failed to process study: Study not found",
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"details": null
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}
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```
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## Example API Calls
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### Using curl
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```bash
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# Migrate a study by accession number
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curl -X POST "http://localhost:8000/migrate/ABC12345" \
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-H "Authorization: Bearer your-token" \
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-H "Content-Type: application/json"
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```
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### Using Python requests
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```python
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import requests
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url = "http://localhost:8000/migrate/ABC12345"
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headers = {
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"Authorization": "Bearer your-token",
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"Content-Type": "application/json"
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}
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response = requests.post(url, headers=headers)
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print(response.json())
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```
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## Logs
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The API logs are stored in the `logs/api.log` file. The log includes information about:
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- API startup and shutdown
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- Migration requests
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- Errors during migration process
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- Integration with HIS results
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## Troubleshooting
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1. **Authentication Error**:
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- Make sure you're providing the correct token in the Authorization header
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- Check that the token format is `Bearer your-token`
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2. **Study Not Found**:
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- Verify that the accession number is correct
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- Check if the PACS server is reachable
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- Verify that the study exists in the source PACS
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3. **Connection Error**:
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- Check PACS connectivity
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- Verify network settings in `config/settings.py`
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## Integrating with External Systems
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You can call this API from other systems to trigger DICOM migrations for specific studies:
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1. Obtain the API token
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2. Make a POST request to `/migrate/{accession_number}`
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3. Handle the JSON response based on the `success` field
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## Technical Details
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### DICOM File Cleanup
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The API implements a robust cleanup mechanism to ensure that DICOM files are always removed after processing:
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1. **Exit Handlers**: The application registers cleanup handlers via Python's `atexit` module and signal handlers for graceful cleanup during server shutdown.
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2. **Per-Request Cleanup**: After each migration request completes (whether successful or not), the API explicitly calls the cleanup function to remove all DICOM files associated with the study.
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3. **Directory Registration**: All temporary directories created during the migration process are registered for cleanup, ensuring no files are left behind.
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This dual approach (exit handlers + explicit cleanup) ensures that:
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- DICOM files are immediately removed after each API request completes
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- No files are left behind even if the server crashes or is terminated abnormally
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- Disk space is efficiently managed during high-volume operations
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### Authentication
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The API uses Bearer token authentication. The token is specified through:
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121
api-app/main.py
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121
api-app/main.py
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#!/usr/bin/env python3
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"""
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FastAPI application for DICOM migration service.
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"""
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import sys
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import os
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import json
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from typing import Dict, Any, Optional
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from fastapi import FastAPI, HTTPException, Depends, status
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from fastapi.security import HTTPBearer, HTTPAuthorizationCredentials
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from pydantic import BaseModel
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# Add parent directory to sys.path to allow importing from the main project
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sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
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# Import the process module for API-specific processing
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from process import process_study_by_accession
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from utils.logger import setup_logger
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from utils.dicom_utils import create_directory_if_not_exists
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from utils.cleanup import register_exit_handlers
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# Create API logger
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api_logger = setup_logger("api", "logs/api.log")
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# Initialize FastAPI app
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app = FastAPI(
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title="DICOM Migration API",
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description="API for migrating DICOM studies by accession number",
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version="1.0.0"
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)
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# Security scheme for Bearer token authentication
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security = HTTPBearer()
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# Environment variable for API key (use a secure method in production)
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API_TOKEN = os.environ.get("API_TOKEN", "token-his2-untuk-hit-api-migrasi-clarity")
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class MigrationResponse(BaseModel):
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"""Response model for migration endpoints."""
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success: bool
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message: str
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details: Optional[Dict[str, Any]] = None
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def verify_token(credentials: HTTPAuthorizationCredentials = Depends(security)):
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"""
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Verify the authentication token.
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Args:
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credentials: Bearer token credentials
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Returns:
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bool: True if token is valid
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Raises:
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HTTPException: If token is invalid
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"""
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if credentials.scheme != "Bearer":
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raise HTTPException(
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status_code=status.HTTP_401_UNAUTHORIZED,
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detail="Invalid authentication scheme. Bearer token required."
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)
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if credentials.credentials != API_TOKEN:
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raise HTTPException(
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status_code=status.HTTP_401_UNAUTHORIZED,
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detail="Invalid token or expired token"
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)
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return True
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@app.on_event("startup")
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async def startup_event():
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"""Initialize resources when the API starts."""
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register_exit_handlers()
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api_logger.info("API started successfully")
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@app.get("/", response_model=MigrationResponse)
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async def root():
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"""
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Root endpoint to check if the API is running.
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"""
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return {
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"success": True,
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"message": "DICOM Migration API is running",
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"details": {
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"version": "1.0.0",
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"copyright": "PT. Sadhana Abiyasa Sampoerna",
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"developer": "Mario and FX Padmanto"
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}
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}
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@app.post("/migrate/{accession_number}", response_model=MigrationResponse)
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async def migrate_study(
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accession_number: str,
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_: bool = Depends(verify_token)
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):
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"""
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Migrate a single study by its accession number.
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Args:
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accession_number: The accession number of the study to migrate
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Returns:
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MigrationResponse: The result of the migration operation
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"""
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api_logger.info(f"Received migration request for accession number: {accession_number}")
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# Process the study using the specialized API processing module
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result = process_study_by_accession(accession_number)
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if result['success']:
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api_logger.info(f"Successfully processed migration for accession number: {accession_number}")
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else:
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api_logger.error(f"Failed to process migration for accession number: {accession_number}: {result['message']}")
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return result
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if __name__ == "__main__":
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import uvicorn
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uvicorn.run("main:app", host="0.0.0.0", port=8888, reload=True)
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278
api-app/process.py
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278
api-app/process.py
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#!/usr/bin/env python3
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"""
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Process module for DICOM migration API service.
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This module contains the core processing logic for migrating DICOM studies through the API.
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"""
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import os
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import sys
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import json
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import shutil
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from datetime import datetime
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import requests
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# Add parent directory to sys.path to allow importing from the main project
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sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
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from config import settings
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from services.dicom_finder import DicomFinder
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from services.dicom_retriever import DicomRetriever
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from services.dicom_sender import DicomSender
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from utils.logger import setup_logger
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from utils.dicom_utils import save_json_data, create_directory_if_not_exists
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# Create API process logger
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process_logger = setup_logger("api_process", "logs/api_process.log")
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def cleanup_study_directory(study_uid):
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"""
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Explicitly clean up the DICOM files for a study after processing.
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Args:
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study_uid: Study Instance UID to clean up
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Returns:
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bool: True if cleanup was successful, False otherwise
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"""
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study_dir = os.path.join(settings.DICOM_STORE_DIR, study_uid)
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process_logger.info(f"Cleaning up DICOM files for study: {study_uid} at {study_dir}")
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try:
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if os.path.exists(study_dir):
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shutil.rmtree(study_dir)
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process_logger.info(f"Successfully removed study directory: {study_dir}")
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return True
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else:
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process_logger.warning(f"Study directory does not exist: {study_dir}")
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return True # Return True since there's nothing to clean
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except Exception as e:
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process_logger.error(f"Error cleaning up study directory {study_dir}: {str(e)}")
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return False
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def process_study_by_accession(accession_number):
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"""
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Process a study by its accession number for the API service.
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This function:
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1. Finds the study UID based on accession number
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2. Retrieves DICOM files using C-GET
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3. Sends DICOM files to destination PACS using C-STORE
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4. Sends study information to HIS API
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5. Cleans up temporary DICOM files
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Args:
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accession_number: The accession number of the study to process
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Returns:
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dict: Result with success status, message, and details
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"""
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process_logger.info(f"Processing study with accession number: {accession_number}")
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# Initialize response data
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response_data = {
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"success": False,
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"message": "",
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"details": {
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"accession_number": accession_number,
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"process_start_time": datetime.now().strftime('%Y-%m-%d %H:%M:%S'),
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"steps_completed": []
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}
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}
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try:
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# STEP 1: Find study by accession number to get the Study UID
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process_logger.info(f"Finding study with accession number: {accession_number}")
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finder = DicomFinder()
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study = finder.find_study_by_accession(accession_number)
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if not study:
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process_logger.error(f"Study not found for accession number: {accession_number}")
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response_data["message"] = f"Study not found for accession number: {accession_number}"
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return response_data
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study_uid = study.StudyInstanceUID
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patient_id = getattr(study, 'PatientID', '')
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study_description = getattr(study, 'StudyDescription', '')
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study_date = getattr(study, 'StudyDate', '')
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study_time = getattr(study, 'StudyTime', '000000')
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response_data["details"]["study_uid"] = study_uid
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response_data["details"]["patient_id"] = patient_id
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response_data["details"]["study_description"] = study_description
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process_logger.info(f"Found study with UID: {study_uid} for accession number: {accession_number}")
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response_data["details"]["steps_completed"].append("study_found")
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# STEP 2: Retrieve the study using C-GET
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process_logger.info(f"Retrieving study: {study_uid}")
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retriever = DicomRetriever()
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retrieve_result = retriever.retrieve_study(study_uid, accession_number=accession_number)
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if not retrieve_result['success']:
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process_logger.error(f"Failed to retrieve study {study_uid}: {retrieve_result['status']}")
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cleanup_study_directory(study_uid) # Clean up any partial files
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response_data["message"] = f"Failed to retrieve study: {retrieve_result['status']}"
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return response_data
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||||||
|
process_logger.info(f"Retrieved {retrieve_result['successful_instances']} instances for study {study_uid}")
|
||||||
|
response_data["details"]["instances_retrieved"] = retrieve_result['successful_instances']
|
||||||
|
response_data["details"]["steps_completed"].append("study_retrieved")
|
||||||
|
|
||||||
|
# STEP 3: Send the study to destination PACS using C-STORE
|
||||||
|
process_logger.info(f"Sending study {study_uid} to destination PACS")
|
||||||
|
sender = DicomSender()
|
||||||
|
send_result = sender.send_study(os.path.join(settings.DICOM_STORE_DIR, study_uid))
|
||||||
|
|
||||||
|
response_data["details"]["files_sent"] = send_result['successful_sends']
|
||||||
|
response_data["details"]["total_files"] = send_result['total_files']
|
||||||
|
|
||||||
|
if not send_result['success']:
|
||||||
|
process_logger.error(f"Failed to send study {study_uid}: {send_result.get('error', 'Unknown error')}")
|
||||||
|
# We continue processing even if send fails, to log the details
|
||||||
|
response_data["details"]["c_store_success"] = False
|
||||||
|
response_data["details"]["c_store_error"] = send_result.get('error', 'Unknown error')
|
||||||
|
else:
|
||||||
|
process_logger.info(f"Successfully sent {send_result['successful_sends']} of {send_result['total_files']} files to destination PACS")
|
||||||
|
response_data["details"]["c_store_success"] = True
|
||||||
|
|
||||||
|
response_data["details"]["steps_completed"].append("study_sent")
|
||||||
|
|
||||||
|
# STEP 4: Create detailed log for the study
|
||||||
|
process_logger.info(f"Creating detailed log for study: {study_uid}")
|
||||||
|
series_list = finder.find_series_for_study(study_uid, accession_number=accession_number)
|
||||||
|
|
||||||
|
study_datetime = f"{study_date}{study_time}"
|
||||||
|
|
||||||
|
study_log = {
|
||||||
|
'Study_IUID': study_uid,
|
||||||
|
'AccessionNumber': accession_number,
|
||||||
|
'PatientID': patient_id,
|
||||||
|
'StudyDescription': study_description,
|
||||||
|
'StudyDateTime': study_datetime,
|
||||||
|
'CstoreSuccess': send_result['success'],
|
||||||
|
'Series': []
|
||||||
|
}
|
||||||
|
|
||||||
|
for series in series_list:
|
||||||
|
series_uid = series.SeriesInstanceUID
|
||||||
|
|
||||||
|
# Get first instance for the series
|
||||||
|
instance = finder.find_first_instance_for_series(study_uid, series_uid)
|
||||||
|
|
||||||
|
# Helper function to safely get attributes
|
||||||
|
def safe_get_attr(obj, attr_name, default=''):
|
||||||
|
"""Get attribute value, ensuring None is converted to default."""
|
||||||
|
value = getattr(obj, attr_name, default)
|
||||||
|
return default if value is None else str(value)
|
||||||
|
|
||||||
|
series_info = {
|
||||||
|
'Series_IUID': safe_get_attr(series, 'SeriesInstanceUID'),
|
||||||
|
'SeriesNumber': safe_get_attr(series, 'SeriesNumber'),
|
||||||
|
'SeriesDescription': safe_get_attr(series, 'SeriesDescription'),
|
||||||
|
'NumberOfInstances': safe_get_attr(series, 'NumberOfSeriesRelatedInstances'),
|
||||||
|
'SOP_IUID': safe_get_attr(instance, 'SOPInstanceUID') if instance else ''
|
||||||
|
}
|
||||||
|
|
||||||
|
study_log['Series'].append(series_info)
|
||||||
|
|
||||||
|
response_data["details"]["series_count"] = len(study_log['Series'])
|
||||||
|
response_data["details"]["steps_completed"].append("log_created")
|
||||||
|
|
||||||
|
# STEP 5: Send study_log to HIS API
|
||||||
|
process_logger.info(f"Sending study data to HIS API for accession: {accession_number}")
|
||||||
|
his_url = f"http://{settings.HIS_HOST}{settings.HIS_URL}"
|
||||||
|
|
||||||
|
try:
|
||||||
|
headers = {
|
||||||
|
'id': 'Vmtaa2MySnRUblJTYWtKb1ZucHNNVlZVU2pSaFIwNTBZa1JDYkZaV1NtOWFSV1JIVmxkSmQxSnJUbFpTVlZwRlZsaGpPVkJSUFQwPQ==',
|
||||||
|
'Content-Type': 'application/json'
|
||||||
|
}
|
||||||
|
response = requests.post(his_url, json=study_log, headers=headers)
|
||||||
|
|
||||||
|
# Add response data to the log
|
||||||
|
study_log['HisApiResponse'] = {
|
||||||
|
'StatusCode': response.status_code,
|
||||||
|
'ResponseText': response.text,
|
||||||
|
'Success': False,
|
||||||
|
'Timestamp': datetime.now().strftime('%Y-%m-%d %H:%M:%S')
|
||||||
|
}
|
||||||
|
|
||||||
|
response_data["details"]["his_api_status_code"] = response.status_code
|
||||||
|
|
||||||
|
# Parse the response
|
||||||
|
try:
|
||||||
|
response_data_his = response.json() if response.content else {}
|
||||||
|
study_log['HisApiResponse']['ResponseData'] = response_data_his
|
||||||
|
|
||||||
|
if response.status_code == 200 and response_data_his.get('OK') == "1":
|
||||||
|
study_log['HisApiResponse']['Success'] = True
|
||||||
|
process_logger.info(f"Successfully sent JSON {accession_number} to HIS API")
|
||||||
|
response_data["details"]["his_integration_success"] = True
|
||||||
|
response_data["details"]["steps_completed"].append("his_api_success")
|
||||||
|
else:
|
||||||
|
error_msg = response_data_his.get('message', 'Unknown error')
|
||||||
|
process_logger.error(f"Failed to send JSON for {accession_number} to HIS API: {error_msg}. Study_IUID: {study_uid}")
|
||||||
|
response_data["details"]["his_integration_success"] = False
|
||||||
|
response_data["details"]["his_error"] = error_msg
|
||||||
|
response_data["details"]["steps_completed"].append("his_api_failed")
|
||||||
|
except ValueError:
|
||||||
|
study_log['HisApiResponse']['ParseError'] = "Invalid JSON response"
|
||||||
|
process_logger.error(f"Failed to parse response for {accession_number}, invalid JSON response. Status code: {response.status_code}")
|
||||||
|
response_data["details"]["his_integration_success"] = False
|
||||||
|
response_data["details"]["his_error"] = "Invalid JSON response from HIS API"
|
||||||
|
response_data["details"]["steps_completed"].append("his_api_failed")
|
||||||
|
|
||||||
|
except Exception as e:
|
||||||
|
study_log['HisApiResponse'] = {
|
||||||
|
'Success': False,
|
||||||
|
'Error': str(e),
|
||||||
|
'Timestamp': datetime.now().strftime('%Y-%m-%d %H:%M:%S')
|
||||||
|
}
|
||||||
|
process_logger.error(f"Error sending study for {accession_number} to HIS API: {str(e)}")
|
||||||
|
response_data["details"]["his_integration_success"] = False
|
||||||
|
response_data["details"]["his_error"] = str(e)
|
||||||
|
response_data["details"]["steps_completed"].append("his_api_error")
|
||||||
|
|
||||||
|
# STEP 6: Clean up DICOM files
|
||||||
|
cleanup_result = cleanup_study_directory(study_uid)
|
||||||
|
if cleanup_result:
|
||||||
|
process_logger.info(f"Successfully cleaned up DICOM files for study: {study_uid}")
|
||||||
|
response_data["details"]["cleanup_success"] = True
|
||||||
|
response_data["details"]["steps_completed"].append("cleanup_success")
|
||||||
|
else:
|
||||||
|
process_logger.warning(f"Failed to clean up DICOM files for study: {study_uid}")
|
||||||
|
response_data["details"]["cleanup_success"] = False
|
||||||
|
response_data["details"]["steps_completed"].append("cleanup_failed")
|
||||||
|
|
||||||
|
# STEP 7: Save the study log for reference
|
||||||
|
log_dir = settings.JSON_OUTPUT_DIR
|
||||||
|
create_directory_if_not_exists(log_dir)
|
||||||
|
log_filename = f"api_{accession_number}.json"
|
||||||
|
save_json_data(study_log, log_filename, log_dir)
|
||||||
|
process_logger.info(f"Saved study log to {os.path.join(log_dir, log_filename)}")
|
||||||
|
|
||||||
|
# Set final response based on C-STORE success (primary success metric)
|
||||||
|
response_data["success"] = send_result['success']
|
||||||
|
if send_result['success']:
|
||||||
|
response_data["message"] = f"Berhasil migrasi file DICOM Accession Number: {accession_number}"
|
||||||
|
else:
|
||||||
|
response_data["message"] = f"Gagal migrasi file DICOM: {send_result.get('error', 'Unknown error')}"
|
||||||
|
|
||||||
|
process_logger.info(f"Completed processing study with accession number: {accession_number}")
|
||||||
|
response_data["details"]["process_end_time"] = datetime.now().strftime('%Y-%m-%d %H:%M:%S')
|
||||||
|
|
||||||
|
return response_data
|
||||||
|
|
||||||
|
except Exception as e:
|
||||||
|
process_logger.exception(f"Unexpected error processing study {accession_number}: {str(e)}")
|
||||||
|
|
||||||
|
# Try to clean up if we have a study_uid
|
||||||
|
if 'study_uid' in locals():
|
||||||
|
cleanup_study_directory(study_uid)
|
||||||
|
|
||||||
|
response_data["message"] = f"Error during migration: {str(e)}"
|
||||||
|
response_data["details"]["error"] = str(e)
|
||||||
|
response_data["details"]["process_end_time"] = datetime.now().strftime('%Y-%m-%d %H:%M:%S')
|
||||||
|
|
||||||
|
return response_data
|
||||||
9
api-app/requirements.txt
Normal file
9
api-app/requirements.txt
Normal file
@@ -0,0 +1,9 @@
|
|||||||
|
fastapi>=0.95.0
|
||||||
|
uvicorn>=0.22.0
|
||||||
|
pydicom>=2.3.0
|
||||||
|
pynetdicom>=2.0.0
|
||||||
|
python-dateutil>=2.8.2
|
||||||
|
retry==0.9.2
|
||||||
|
requests>=2.28.0
|
||||||
|
python-jose>=3.3.0
|
||||||
|
python-multipart>=0.0.6
|
||||||
41
api-app/run.py
Normal file
41
api-app/run.py
Normal file
@@ -0,0 +1,41 @@
|
|||||||
|
#!/usr/bin/env python3
|
||||||
|
"""
|
||||||
|
Script to run the FastAPI server for DICOM migration service.
|
||||||
|
"""
|
||||||
|
import os
|
||||||
|
import sys
|
||||||
|
import uvicorn
|
||||||
|
import argparse
|
||||||
|
|
||||||
|
def parse_args():
|
||||||
|
"""Parse command-line arguments."""
|
||||||
|
parser = argparse.ArgumentParser(description='DICOM Migration API Server')
|
||||||
|
parser.add_argument('--host', default='0.0.0.0', help='Host to bind to')
|
||||||
|
parser.add_argument('--port', type=int, default=8000, help='Port to bind to')
|
||||||
|
parser.add_argument('--token', help='API token for authentication (overrides environment variable)')
|
||||||
|
parser.add_argument('--reload', action='store_true', help='Enable auto-reload for development')
|
||||||
|
return parser.parse_args()
|
||||||
|
|
||||||
|
def main():
|
||||||
|
"""Main function to run the API server."""
|
||||||
|
args = parse_args()
|
||||||
|
|
||||||
|
# Set API token if provided
|
||||||
|
if args.token:
|
||||||
|
os.environ['API_TOKEN'] = args.token
|
||||||
|
|
||||||
|
# Check if API_TOKEN is set
|
||||||
|
if not os.environ.get('API_TOKEN'):
|
||||||
|
print("WARNING: API_TOKEN not set. Using default token 'token-his2-untuk-hit-api-migrasi-clarity'.")
|
||||||
|
print("Set environment variable API_TOKEN or use --token argument for better security.")
|
||||||
|
|
||||||
|
print(f"Starting DICOM Migration API server on {args.host}:{args.port}")
|
||||||
|
uvicorn.run(
|
||||||
|
"main:app",
|
||||||
|
host=args.host,
|
||||||
|
port=args.port,
|
||||||
|
reload=args.reload
|
||||||
|
)
|
||||||
|
|
||||||
|
if __name__ == "__main__":
|
||||||
|
main()
|
||||||
@@ -348,3 +348,81 @@ class DicomFinder:
|
|||||||
raise DicomQueryError(error_msg)
|
raise DicomQueryError(error_msg)
|
||||||
|
|
||||||
return study
|
return study
|
||||||
|
|
||||||
|
@dicom_retry(exception_types=(DicomQueryError, ConnectionError))
|
||||||
|
def find_study_by_accession(self, accession_number):
|
||||||
|
"""
|
||||||
|
Find a specific study by its AccessionNumber.
|
||||||
|
|
||||||
|
Args:
|
||||||
|
accession_number (str): AccessionNumber to find
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
Dataset: Study dataset or None if not found
|
||||||
|
"""
|
||||||
|
logger.info(f"Finding study with AccessionNumber: {accession_number}")
|
||||||
|
|
||||||
|
# Create query dataset
|
||||||
|
ds = Dataset()
|
||||||
|
ds.QueryRetrieveLevel = 'STUDY'
|
||||||
|
|
||||||
|
# Set the AccessionNumber filter
|
||||||
|
ds.AccessionNumber = accession_number
|
||||||
|
|
||||||
|
# Required fields (minimal set)
|
||||||
|
ds.StudyInstanceUID = ''
|
||||||
|
ds.StudyDate = ''
|
||||||
|
|
||||||
|
# Additional fields we want to retrieve
|
||||||
|
ds.PatientID = '' # MedrecID
|
||||||
|
ds.StudyDescription = ''
|
||||||
|
ds.StudyTime = ''
|
||||||
|
ds.NumberOfStudyRelatedSeries = ''
|
||||||
|
|
||||||
|
# Create association
|
||||||
|
assoc = self.ae.associate(
|
||||||
|
self.pacs_config['host'],
|
||||||
|
self.pacs_config['port'],
|
||||||
|
ae_title=self.pacs_config['aet']
|
||||||
|
)
|
||||||
|
|
||||||
|
study = None
|
||||||
|
|
||||||
|
if assoc.is_established:
|
||||||
|
try:
|
||||||
|
logger.debug("Association established, sending C-FIND request")
|
||||||
|
|
||||||
|
# Send C-FIND request
|
||||||
|
responses = assoc.send_c_find(
|
||||||
|
ds,
|
||||||
|
StudyRootQueryRetrieveInformationModelFind
|
||||||
|
)
|
||||||
|
|
||||||
|
# Process responses - just get the first one
|
||||||
|
for (status, dataset) in responses:
|
||||||
|
if status and status.Status == 0xFF00: # Pending
|
||||||
|
if dataset:
|
||||||
|
study = dataset
|
||||||
|
logger.debug(f"Found study: {dataset.StudyInstanceUID} for AccessionNumber: {accession_number}")
|
||||||
|
break
|
||||||
|
elif status and status.Status != 0x0000: # Not success
|
||||||
|
logger.error(f"C-FIND error: {status}")
|
||||||
|
|
||||||
|
if study:
|
||||||
|
logger.info(f"Found study with AccessionNumber {accession_number}, StudyUID: {study.StudyInstanceUID}")
|
||||||
|
else:
|
||||||
|
logger.warning(f"No study found with AccessionNumber {accession_number}")
|
||||||
|
|
||||||
|
except Exception as e:
|
||||||
|
logger.error(f"Error during C-FIND by AccessionNumber: {str(e)}")
|
||||||
|
raise DicomQueryError(f"C-FIND operation failed: {str(e)}")
|
||||||
|
finally:
|
||||||
|
# Release the association
|
||||||
|
assoc.release()
|
||||||
|
logger.debug("Association released")
|
||||||
|
else:
|
||||||
|
error_msg = f"Association rejected, aborted or never connected to {self.pacs_config['aet']}"
|
||||||
|
logger.error(error_msg)
|
||||||
|
raise DicomQueryError(error_msg)
|
||||||
|
|
||||||
|
return study
|
||||||
@@ -42,6 +42,36 @@ def cleanup_dicom_files():
|
|||||||
# Clear the registry after cleanup
|
# Clear the registry after cleanup
|
||||||
_cleanup_dirs.clear()
|
_cleanup_dirs.clear()
|
||||||
|
|
||||||
|
def cleanup_study_directory(study_uid):
|
||||||
|
"""
|
||||||
|
Immediately remove the directory for a specific study.
|
||||||
|
|
||||||
|
Args:
|
||||||
|
study_uid (str): Study Instance UID of the study to clean up
|
||||||
|
|
||||||
|
Returns:
|
||||||
|
bool: True if cleanup was successful, False otherwise
|
||||||
|
"""
|
||||||
|
study_dir = os.path.join(settings.DICOM_STORE_DIR, study_uid)
|
||||||
|
|
||||||
|
if not os.path.exists(study_dir):
|
||||||
|
logger.debug(f"Cleanup: Study directory does not exist: {study_dir}")
|
||||||
|
return True
|
||||||
|
|
||||||
|
try:
|
||||||
|
shutil.rmtree(study_dir)
|
||||||
|
logger.info(f"Cleanup: Removed DICOM files from {study_dir}")
|
||||||
|
|
||||||
|
# Also remove from the registry if it's there
|
||||||
|
global _cleanup_dirs
|
||||||
|
if study_dir in _cleanup_dirs:
|
||||||
|
_cleanup_dirs.remove(study_dir)
|
||||||
|
|
||||||
|
return True
|
||||||
|
except Exception as e:
|
||||||
|
logger.error(f"Cleanup: Failed to remove DICOM files from {study_dir}: {str(e)}")
|
||||||
|
return False
|
||||||
|
|
||||||
def register_exit_handlers():
|
def register_exit_handlers():
|
||||||
"""
|
"""
|
||||||
Register cleanup handlers for various exit scenarios.
|
Register cleanup handlers for various exit scenarios.
|
||||||
|
|||||||
Reference in New Issue
Block a user