init
This commit is contained in:
12
extensions/cornerstone-dicom-pmap/.webpack/webpack.dev.js
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12
extensions/cornerstone-dicom-pmap/.webpack/webpack.dev.js
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@@ -0,0 +1,12 @@
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const path = require('path');
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const webpackCommon = require('./../../../.webpack/webpack.base.js');
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const SRC_DIR = path.join(__dirname, '../src');
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const DIST_DIR = path.join(__dirname, '../dist');
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||||
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const ENTRY = {
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||||
app: `${SRC_DIR}/index.tsx`,
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};
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module.exports = (env, argv) => {
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return webpackCommon(env, argv, { SRC_DIR, DIST_DIR, ENTRY });
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};
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54
extensions/cornerstone-dicom-pmap/.webpack/webpack.prod.js
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54
extensions/cornerstone-dicom-pmap/.webpack/webpack.prod.js
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@@ -0,0 +1,54 @@
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const webpack = require('webpack');
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const { merge } = require('webpack-merge');
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const path = require('path');
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const webpackCommon = require('./../../../.webpack/webpack.base.js');
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const MiniCssExtractPlugin = require('mini-css-extract-plugin');
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const pkg = require('./../package.json');
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const ROOT_DIR = path.join(__dirname, '../');
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const SRC_DIR = path.join(__dirname, '../src');
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const DIST_DIR = path.join(__dirname, '../dist');
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const ENTRY = {
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app: `${SRC_DIR}/index.tsx`,
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};
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const outputName = `ohif-${pkg.name.split('/').pop()}`;
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module.exports = (env, argv) => {
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const commonConfig = webpackCommon(env, argv, { SRC_DIR, DIST_DIR, ENTRY });
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return merge(commonConfig, {
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stats: {
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colors: true,
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hash: true,
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timings: true,
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assets: true,
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chunks: false,
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chunkModules: false,
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modules: false,
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children: false,
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warnings: true,
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},
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optimization: {
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minimize: true,
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sideEffects: true,
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},
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output: {
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path: ROOT_DIR,
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library: 'ohif-extension-cornerstone-dicom-pmap',
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libraryTarget: 'umd',
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filename: pkg.main,
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},
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externals: [/\b(vtk.js)/, /\b(dcmjs)/, /\b(gl-matrix)/, /^@ohif/, /^@cornerstonejs/],
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plugins: [
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new webpack.optimize.LimitChunkCountPlugin({
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maxChunks: 1,
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}),
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new MiniCssExtractPlugin({
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filename: `./dist/${outputName}.css`,
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chunkFilename: `./dist/${outputName}.css`,
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}),
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],
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});
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};
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405
extensions/cornerstone-dicom-pmap/CHANGELOG.md
Normal file
405
extensions/cornerstone-dicom-pmap/CHANGELOG.md
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@@ -0,0 +1,405 @@
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# Change Log
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||||
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||||
All notable changes to this project will be documented in this file.
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See [Conventional Commits](https://conventionalcommits.org) for commit guidelines.
|
||||
|
||||
## [3.9.1](https://github.com/OHIF/Viewers/compare/v3.9.0...v3.9.1) (2024-11-13)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* video playback ([#4497](https://github.com/OHIF/Viewers/issues/4497)) ([610faa5](https://github.com/OHIF/Viewers/commit/610faa5a2738da5eabc40e57e338c359f481e852))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.111...v3.9.0) (2024-11-12)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.111](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.110...v3.9.0-beta.111) (2024-11-12)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* Measurement Tracking: Various UI and functionality improvements ([#4481](https://github.com/OHIF/Viewers/issues/4481)) ([62b2748](https://github.com/OHIF/Viewers/commit/62b27488471c9d5979142e2d15872a85778b90ed))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.110](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.109...v3.9.0-beta.110) (2024-11-11)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **bugs:** Update dependencies and enhance UI components ([#4478](https://github.com/OHIF/Viewers/issues/4478)) ([05d41c5](https://github.com/OHIF/Viewers/commit/05d41c52068a3b7ba249f15ecdf71838c352fd30))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.109](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.108...v3.9.0-beta.109) (2024-11-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.108](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.107...v3.9.0-beta.108) (2024-11-07)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* **tmtv:** fix toggle one up weird behaviours ([#4473](https://github.com/OHIF/Viewers/issues/4473)) ([aa2b649](https://github.com/OHIF/Viewers/commit/aa2b649444eb4fe5422e72ea7830a709c4d24a90))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.107](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.106...v3.9.0-beta.107) (2024-11-06)
|
||||
|
||||
|
||||
### Bug Fixes
|
||||
|
||||
* build ([#4471](https://github.com/OHIF/Viewers/issues/4471)) ([3d11ef2](https://github.com/OHIF/Viewers/commit/3d11ef28f213361ec7586809317bd219fa70e742))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.106](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.105...v3.9.0-beta.106) (2024-11-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.105](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.104...v3.9.0-beta.105) (2024-11-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.104](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.103...v3.9.0-beta.104) (2024-10-30)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.103](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.102...v3.9.0-beta.103) (2024-10-29)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.102](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.101...v3.9.0-beta.102) (2024-10-29)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.101](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.100...v3.9.0-beta.101) (2024-10-18)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.100](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.99...v3.9.0-beta.100) (2024-10-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.99](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.98...v3.9.0-beta.99) (2024-10-17)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **SR:** SCOORD3D point annotations support for stack viewports ([#4315](https://github.com/OHIF/Viewers/issues/4315)) ([ac1cad2](https://github.com/OHIF/Viewers/commit/ac1cad25af12ee0f7d508647e3134ed724d9b4d3))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.98](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.97...v3.9.0-beta.98) (2024-10-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.97](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.96...v3.9.0-beta.97) (2024-10-11)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.96](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.95...v3.9.0-beta.96) (2024-10-10)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.95](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.94...v3.9.0-beta.95) (2024-10-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.94](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.93...v3.9.0-beta.94) (2024-10-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.93](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.92...v3.9.0-beta.93) (2024-10-04)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.92](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.91...v3.9.0-beta.92) (2024-10-01)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.91](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.90...v3.9.0-beta.91) (2024-10-01)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.90](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.89...v3.9.0-beta.90) (2024-09-30)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.89](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.88...v3.9.0-beta.89) (2024-09-27)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.88](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.87...v3.9.0-beta.88) (2024-09-24)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.87](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.86...v3.9.0-beta.87) (2024-09-19)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.86](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.85...v3.9.0-beta.86) (2024-09-19)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.85](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.84...v3.9.0-beta.85) (2024-09-17)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.84](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.83...v3.9.0-beta.84) (2024-09-12)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.83](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.82...v3.9.0-beta.83) (2024-09-11)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.82](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.81...v3.9.0-beta.82) (2024-09-05)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.81](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.80...v3.9.0-beta.81) (2024-08-27)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.80](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.79...v3.9.0-beta.80) (2024-08-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.79](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.78...v3.9.0-beta.79) (2024-08-16)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.78](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.77...v3.9.0-beta.78) (2024-08-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.77](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.76...v3.9.0-beta.77) (2024-08-15)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.76](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.75...v3.9.0-beta.76) (2024-08-08)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.75](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.74...v3.9.0-beta.75) (2024-08-07)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.74](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.73...v3.9.0-beta.74) (2024-08-06)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.73](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.72...v3.9.0-beta.73) (2024-08-02)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.72](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.71...v3.9.0-beta.72) (2024-07-31)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.71](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.70...v3.9.0-beta.71) (2024-07-30)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.70](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.69...v3.9.0-beta.70) (2024-07-30)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.69](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.68...v3.9.0-beta.69) (2024-07-27)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.68](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.67...v3.9.0-beta.68) (2024-07-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.67](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.66...v3.9.0-beta.67) (2024-07-26)
|
||||
|
||||
**Note:** Version bump only for package @ohif/extension-cornerstone-dicom-pmap
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
# [3.9.0-beta.66](https://github.com/OHIF/Viewers/compare/v3.9.0-beta.65...v3.9.0-beta.66) (2024-07-24)
|
||||
|
||||
|
||||
### Features
|
||||
|
||||
* **pmap:** added support for parametric map ([#4284](https://github.com/OHIF/Viewers/issues/4284)) ([fc0064f](https://github.com/OHIF/Viewers/commit/fc0064fd9d8cdc8fde81b81f0e71fd5d077ca22b))
|
||||
20
extensions/cornerstone-dicom-pmap/LICENSE
Normal file
20
extensions/cornerstone-dicom-pmap/LICENSE
Normal file
@@ -0,0 +1,20 @@
|
||||
MIT License
|
||||
|
||||
Copyright (c) 2023 Open Health Imaging Foundation
|
||||
|
||||
Permission is hereby granted, free of charge, to any person obtaining a copy of
|
||||
this software and associated documentation files (the "Software"), to deal in
|
||||
the Software without restriction, including without limitation the rights to
|
||||
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of
|
||||
the Software, and to permit persons to whom the Software is furnished to do so,
|
||||
subject to the following conditions:
|
||||
|
||||
The above copyright notice and this permission notice shall be included in all
|
||||
copies or substantial portions of the Software.
|
||||
|
||||
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS
|
||||
FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
|
||||
COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER
|
||||
IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
|
||||
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
|
||||
12
extensions/cornerstone-dicom-pmap/README.md
Normal file
12
extensions/cornerstone-dicom-pmap/README.md
Normal file
@@ -0,0 +1,12 @@
|
||||
# dicom-pmap
|
||||
## Description
|
||||
|
||||
DICOM PMAP read workflow. This extension will allow you to load a DICOM Parametric
|
||||
Map image and display it on OHIF.
|
||||
|
||||
## Author
|
||||
|
||||
OHIF
|
||||
|
||||
## License
|
||||
MIT
|
||||
44
extensions/cornerstone-dicom-pmap/babel.config.js
Normal file
44
extensions/cornerstone-dicom-pmap/babel.config.js
Normal file
@@ -0,0 +1,44 @@
|
||||
module.exports = {
|
||||
plugins: ['@babel/plugin-proposal-class-properties'],
|
||||
env: {
|
||||
test: {
|
||||
presets: [
|
||||
[
|
||||
// TODO: https://babeljs.io/blog/2019/03/19/7.4.0#migration-from-core-js-2
|
||||
'@babel/preset-env',
|
||||
{
|
||||
modules: 'commonjs',
|
||||
debug: false,
|
||||
},
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
'@babel/preset-react',
|
||||
],
|
||||
plugins: [
|
||||
'@babel/plugin-proposal-object-rest-spread',
|
||||
'@babel/plugin-syntax-dynamic-import',
|
||||
'@babel/plugin-transform-regenerator',
|
||||
'@babel/plugin-transform-runtime',
|
||||
],
|
||||
},
|
||||
production: {
|
||||
presets: [
|
||||
// WebPack handles ES6 --> Target Syntax
|
||||
['@babel/preset-env', { modules: false }],
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
development: {
|
||||
presets: [
|
||||
// WebPack handles ES6 --> Target Syntax
|
||||
['@babel/preset-env', { modules: false }],
|
||||
'@babel/preset-react',
|
||||
'@babel/preset-typescript',
|
||||
],
|
||||
plugins: ['react-hot-loader/babel'],
|
||||
ignore: ['**/*.test.jsx', '**/*.test.js', '__snapshots__', '__tests__'],
|
||||
},
|
||||
},
|
||||
};
|
||||
54
extensions/cornerstone-dicom-pmap/package.json
Normal file
54
extensions/cornerstone-dicom-pmap/package.json
Normal file
@@ -0,0 +1,54 @@
|
||||
{
|
||||
"name": "@ohif/extension-cornerstone-dicom-pmap",
|
||||
"version": "3.9.1",
|
||||
"description": "DICOM Parametric Map read workflow",
|
||||
"author": "OHIF",
|
||||
"license": "MIT",
|
||||
"main": "dist/ohif-extension-cornerstone-dicom-pmap.umd.js",
|
||||
"module": "src/index.tsx",
|
||||
"files": [
|
||||
"dist/**",
|
||||
"public/**",
|
||||
"README.md"
|
||||
],
|
||||
"repository": "OHIF/Viewers",
|
||||
"keywords": [
|
||||
"ohif-extension"
|
||||
],
|
||||
"publishConfig": {
|
||||
"access": "public"
|
||||
},
|
||||
"engines": {
|
||||
"node": ">=14",
|
||||
"npm": ">=6",
|
||||
"yarn": ">=1.18.0"
|
||||
},
|
||||
"scripts": {
|
||||
"clean": "shx rm -rf dist",
|
||||
"clean:deep": "yarn run clean && shx rm -rf node_modules",
|
||||
"dev": "cross-env NODE_ENV=development webpack --config .webpack/webpack.dev.js --watch --output-pathinfo",
|
||||
"dev:dicom-pmap": "yarn run dev",
|
||||
"build": "cross-env NODE_ENV=production webpack --config .webpack/webpack.prod.js",
|
||||
"build:package-1": "yarn run build",
|
||||
"start": "yarn run dev"
|
||||
},
|
||||
"peerDependencies": {
|
||||
"@ohif/core": "3.9.1",
|
||||
"@ohif/extension-cornerstone": "3.9.1",
|
||||
"@ohif/extension-default": "3.9.1",
|
||||
"@ohif/i18n": "3.9.1",
|
||||
"prop-types": "^15.6.2",
|
||||
"react": "^18.3.1",
|
||||
"react-dom": "^18.3.1",
|
||||
"react-i18next": "^12.2.2",
|
||||
"react-router": "^6.8.1",
|
||||
"react-router-dom": "^6.8.1"
|
||||
},
|
||||
"dependencies": {
|
||||
"@babel/runtime": "^7.20.13",
|
||||
"@cornerstonejs/adapters": "^2.2.4",
|
||||
"@cornerstonejs/core": "^2.2.4",
|
||||
"@kitware/vtk.js": "32.1.0",
|
||||
"react-color": "^2.19.3"
|
||||
}
|
||||
}
|
||||
@@ -0,0 +1,244 @@
|
||||
import { utils } from '@ohif/core';
|
||||
import { metaData, cache, utilities as csUtils, volumeLoader } from '@cornerstonejs/core';
|
||||
import { adaptersPMAP } from '@cornerstonejs/adapters';
|
||||
import { SOPClassHandlerId } from './id';
|
||||
import { dicomLoaderService } from '@ohif/extension-cornerstone';
|
||||
|
||||
const VOLUME_LOADER_SCHEME = 'cornerstoneStreamingImageVolume';
|
||||
const sopClassUids = ['1.2.840.10008.5.1.4.1.1.30'];
|
||||
|
||||
function _getDisplaySetsFromSeries(
|
||||
instances,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager
|
||||
) {
|
||||
const instance = instances[0];
|
||||
|
||||
const {
|
||||
StudyInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
SOPInstanceUID,
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
SOPClassUID,
|
||||
wadoRoot,
|
||||
wadoUri,
|
||||
wadoUriRoot,
|
||||
} = instance;
|
||||
|
||||
const displaySet = {
|
||||
// Parametric map use to have the same modality as its referenced volume but
|
||||
// "PMAP" is used in the viewer even though this is not a valid DICOM modality
|
||||
Modality: 'PMAP',
|
||||
isReconstructable: true, // by default for now
|
||||
displaySetInstanceUID: `pmap.${utils.guid()}`,
|
||||
SeriesDescription,
|
||||
SeriesNumber,
|
||||
SeriesDate,
|
||||
SOPInstanceUID,
|
||||
SeriesInstanceUID,
|
||||
StudyInstanceUID,
|
||||
SOPClassHandlerId,
|
||||
SOPClassUID,
|
||||
referencedImages: null,
|
||||
referencedSeriesInstanceUID: null,
|
||||
referencedDisplaySetInstanceUID: null,
|
||||
referencedVolumeURI: null,
|
||||
referencedVolumeId: null,
|
||||
isDerivedDisplaySet: true,
|
||||
loadStatus: {
|
||||
loading: false,
|
||||
loaded: false,
|
||||
},
|
||||
sopClassUids,
|
||||
instance,
|
||||
instances: [instance],
|
||||
wadoRoot,
|
||||
wadoUriRoot,
|
||||
wadoUri,
|
||||
isOverlayDisplaySet: true,
|
||||
};
|
||||
|
||||
const referencedSeriesSequence = instance.ReferencedSeriesSequence;
|
||||
|
||||
if (!referencedSeriesSequence) {
|
||||
console.error('ReferencedSeriesSequence is missing for the parametric map');
|
||||
return;
|
||||
}
|
||||
|
||||
const referencedSeries = referencedSeriesSequence[0] || referencedSeriesSequence;
|
||||
|
||||
displaySet.referencedImages = instance.ReferencedSeriesSequence.ReferencedInstanceSequence;
|
||||
displaySet.referencedSeriesInstanceUID = referencedSeries.SeriesInstanceUID;
|
||||
|
||||
// Does not get the referenced displaySet during parametric displaySet creation
|
||||
// because it is still not available (getDisplaySetByUID returns `undefined`).
|
||||
displaySet.getReferenceDisplaySet = () => {
|
||||
const { displaySetService } = servicesManager.services;
|
||||
|
||||
if (displaySet.referencedDisplaySetInstanceUID) {
|
||||
return displaySetService.getDisplaySetByUID(displaySet.referencedDisplaySetInstanceUID);
|
||||
}
|
||||
|
||||
const referencedDisplaySets = displaySetService.getDisplaySetsForSeries(
|
||||
displaySet.referencedSeriesInstanceUID
|
||||
);
|
||||
|
||||
if (!referencedDisplaySets || referencedDisplaySets.length === 0) {
|
||||
throw new Error('Referenced displaySet is missing for the parametric map');
|
||||
}
|
||||
|
||||
const referencedDisplaySet = referencedDisplaySets[0];
|
||||
|
||||
displaySet.referencedDisplaySetInstanceUID = referencedDisplaySet.displaySetInstanceUID;
|
||||
|
||||
return referencedDisplaySet;
|
||||
};
|
||||
|
||||
// Does not get the referenced volumeId during parametric displaySet creation because the
|
||||
// referenced displaySet is still not available (getDisplaySetByUID returns `undefined`).
|
||||
displaySet.getReferencedVolumeId = () => {
|
||||
if (displaySet.referencedVolumeId) {
|
||||
return displaySet.referencedVolumeId;
|
||||
}
|
||||
|
||||
const referencedDisplaySet = displaySet.getReferenceDisplaySet();
|
||||
const referencedVolumeURI = referencedDisplaySet.displaySetInstanceUID;
|
||||
const referencedVolumeId = `${VOLUME_LOADER_SCHEME}:${referencedVolumeURI}`;
|
||||
|
||||
displaySet.referencedVolumeURI = referencedVolumeURI;
|
||||
displaySet.referencedVolumeId = referencedVolumeId;
|
||||
|
||||
return referencedVolumeId;
|
||||
};
|
||||
|
||||
displaySet.load = async ({ headers }) =>
|
||||
await _load(displaySet, servicesManager, extensionManager, headers);
|
||||
|
||||
return [displaySet];
|
||||
}
|
||||
|
||||
const getRangeFromPixelData = (pixelData: Float32Array) => {
|
||||
let lowest = pixelData[0];
|
||||
let highest = pixelData[0];
|
||||
|
||||
for (let i = 1; i < pixelData.length; i++) {
|
||||
if (pixelData[i] < lowest) {
|
||||
lowest = pixelData[i];
|
||||
}
|
||||
if (pixelData[i] > highest) {
|
||||
highest = pixelData[i];
|
||||
}
|
||||
}
|
||||
|
||||
return [lowest, highest];
|
||||
};
|
||||
|
||||
async function _load(
|
||||
displaySet,
|
||||
servicesManager: AppTypes.ServicesManager,
|
||||
extensionManager,
|
||||
headers
|
||||
) {
|
||||
const volumeId = `${VOLUME_LOADER_SCHEME}:${displaySet.displaySetInstanceUID}`;
|
||||
const volumeLoadObject = cache.getVolumeLoadObject(volumeId);
|
||||
|
||||
if (volumeLoadObject) {
|
||||
return volumeLoadObject.promise;
|
||||
}
|
||||
|
||||
displaySet.loading = true;
|
||||
displaySet.isLoaded = false;
|
||||
|
||||
// We don't want to fire multiple loads, so we'll wait for the first to finish
|
||||
// and also return the same promise to any other callers.
|
||||
const promise = _loadParametricMap({
|
||||
extensionManager,
|
||||
displaySet,
|
||||
headers,
|
||||
});
|
||||
|
||||
cache.putVolumeLoadObject(volumeId, { promise }).catch(err => {
|
||||
throw err;
|
||||
});
|
||||
|
||||
promise
|
||||
.then(() => {
|
||||
displaySet.loading = false;
|
||||
displaySet.isLoaded = true;
|
||||
// Broadcast that loading is complete
|
||||
servicesManager.services.segmentationService._broadcastEvent(
|
||||
servicesManager.services.segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
{
|
||||
pmapDisplaySet: displaySet,
|
||||
}
|
||||
);
|
||||
})
|
||||
.catch(err => {
|
||||
displaySet.loading = false;
|
||||
displaySet.isLoaded = false;
|
||||
throw err;
|
||||
});
|
||||
|
||||
return promise;
|
||||
}
|
||||
|
||||
async function _loadParametricMap({ displaySet, headers }: withAppTypes) {
|
||||
const arrayBuffer = await dicomLoaderService.findDicomDataPromise(displaySet, null, headers);
|
||||
const referencedVolumeId = displaySet.getReferencedVolumeId();
|
||||
const cachedReferencedVolume = cache.getVolume(referencedVolumeId);
|
||||
|
||||
// Parametric map can be loaded only if its referenced volume exists otherwise it will fail
|
||||
if (!cachedReferencedVolume) {
|
||||
throw new Error(
|
||||
'Referenced Volume is missing for the PMAP, and stack viewport PMAP is not supported yet'
|
||||
);
|
||||
}
|
||||
|
||||
const { imageIds } = cachedReferencedVolume;
|
||||
const results = await adaptersPMAP.Cornerstone3D.ParametricMap.generateToolState(
|
||||
imageIds,
|
||||
arrayBuffer,
|
||||
metaData
|
||||
);
|
||||
const { pixelData } = results;
|
||||
const TypedArrayConstructor = pixelData.constructor;
|
||||
const paramMapId = displaySet.displaySetInstanceUID;
|
||||
|
||||
const derivedVolume = await volumeLoader.createAndCacheDerivedVolume(referencedVolumeId, {
|
||||
volumeId: paramMapId,
|
||||
targetBuffer: {
|
||||
type: TypedArrayConstructor.name,
|
||||
},
|
||||
});
|
||||
|
||||
const newPixelData = new TypedArrayConstructor(pixelData.length);
|
||||
for (let i = 0; i < pixelData.length; i++) {
|
||||
newPixelData[i] = pixelData[i] * 100;
|
||||
}
|
||||
derivedVolume.voxelManager.setCompleteScalarDataArray(newPixelData);
|
||||
const range = getRangeFromPixelData(newPixelData);
|
||||
const windowLevel = csUtils.windowLevel.toWindowLevel(range[0], range[1]);
|
||||
|
||||
derivedVolume.metadata.voiLut = [windowLevel];
|
||||
derivedVolume.loadStatus = { loaded: true };
|
||||
|
||||
return derivedVolume;
|
||||
}
|
||||
|
||||
function getSopClassHandlerModule({ servicesManager, extensionManager }) {
|
||||
const getDisplaySetsFromSeries = instances => {
|
||||
return _getDisplaySetsFromSeries(instances, servicesManager, extensionManager);
|
||||
};
|
||||
|
||||
return [
|
||||
{
|
||||
name: 'dicom-pmap',
|
||||
sopClassUids,
|
||||
getDisplaySetsFromSeries,
|
||||
},
|
||||
];
|
||||
}
|
||||
|
||||
export default getSopClassHandlerModule;
|
||||
7
extensions/cornerstone-dicom-pmap/src/id.js
Normal file
7
extensions/cornerstone-dicom-pmap/src/id.js
Normal file
@@ -0,0 +1,7 @@
|
||||
import packageJson from '../package.json';
|
||||
|
||||
const id = packageJson.name;
|
||||
const SOPClassHandlerName = 'dicom-pmap';
|
||||
const SOPClassHandlerId = `${id}.sopClassHandlerModule.${SOPClassHandlerName}`;
|
||||
|
||||
export { id, SOPClassHandlerId, SOPClassHandlerName };
|
||||
39
extensions/cornerstone-dicom-pmap/src/index.tsx
Normal file
39
extensions/cornerstone-dicom-pmap/src/index.tsx
Normal file
@@ -0,0 +1,39 @@
|
||||
import { id } from './id';
|
||||
import React from 'react';
|
||||
import getSopClassHandlerModule from './getSopClassHandlerModule';
|
||||
|
||||
const Component = React.lazy(() => {
|
||||
return import(/* webpackPrefetch: true */ './viewports/OHIFCornerstonePMAPViewport');
|
||||
});
|
||||
|
||||
const OHIFCornerstonePMAPViewport = props => {
|
||||
return (
|
||||
<React.Suspense fallback={<div>Loading...</div>}>
|
||||
<Component {...props} />
|
||||
</React.Suspense>
|
||||
);
|
||||
};
|
||||
|
||||
/**
|
||||
* You can remove any of the following modules if you don't need them.
|
||||
*/
|
||||
const extension = {
|
||||
id,
|
||||
getViewportModule({ servicesManager, extensionManager, commandsManager }) {
|
||||
const ExtendedOHIFCornerstonePMAPViewport = props => {
|
||||
return (
|
||||
<OHIFCornerstonePMAPViewport
|
||||
servicesManager={servicesManager}
|
||||
extensionManager={extensionManager}
|
||||
commandsManager={commandsManager}
|
||||
{...props}
|
||||
/>
|
||||
);
|
||||
};
|
||||
|
||||
return [{ name: 'dicom-pmap', component: ExtendedOHIFCornerstonePMAPViewport }];
|
||||
},
|
||||
getSopClassHandlerModule,
|
||||
};
|
||||
|
||||
export default extension;
|
||||
@@ -0,0 +1,205 @@
|
||||
import PropTypes from 'prop-types';
|
||||
import React, { useCallback, useEffect, useRef, useState } from 'react';
|
||||
import { useViewportGrid, LoadingIndicatorTotalPercent } from '@ohif/ui';
|
||||
|
||||
function OHIFCornerstonePMAPViewport(props: withAppTypes) {
|
||||
const {
|
||||
displaySets,
|
||||
children,
|
||||
viewportOptions,
|
||||
displaySetOptions,
|
||||
servicesManager,
|
||||
extensionManager,
|
||||
} = props;
|
||||
const viewportId = viewportOptions.viewportId;
|
||||
const { displaySetService, segmentationService, uiNotificationService } =
|
||||
servicesManager.services;
|
||||
|
||||
// PMAP viewport will always have a single display set
|
||||
if (displaySets.length !== 1) {
|
||||
throw new Error('PMAP viewport must have a single display set');
|
||||
}
|
||||
|
||||
const pmapDisplaySet = displaySets[0];
|
||||
const [viewportGrid, viewportGridService] = useViewportGrid();
|
||||
const referencedDisplaySetRef = useRef(null);
|
||||
const { viewports, activeViewportId } = viewportGrid;
|
||||
const referencedDisplaySet = pmapDisplaySet.getReferenceDisplaySet();
|
||||
const referencedDisplaySetMetadata = _getReferencedDisplaySetMetadata(
|
||||
referencedDisplaySet,
|
||||
pmapDisplaySet
|
||||
);
|
||||
|
||||
referencedDisplaySetRef.current = {
|
||||
displaySet: referencedDisplaySet,
|
||||
metadata: referencedDisplaySetMetadata,
|
||||
};
|
||||
|
||||
const [pmapIsLoading, setPmapIsLoading] = useState(!pmapDisplaySet.isLoaded);
|
||||
|
||||
// Add effect to listen for loading complete
|
||||
useEffect(() => {
|
||||
const { unsubscribe } = segmentationService.subscribe(
|
||||
segmentationService.EVENTS.SEGMENTATION_LOADING_COMPLETE,
|
||||
evt => {
|
||||
if (evt.pmapDisplaySet?.displaySetInstanceUID === pmapDisplaySet.displaySetInstanceUID) {
|
||||
setPmapIsLoading(false);
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
unsubscribe();
|
||||
};
|
||||
}, [pmapDisplaySet]);
|
||||
|
||||
const getCornerstoneViewport = useCallback(() => {
|
||||
const { displaySet: referencedDisplaySet } = referencedDisplaySetRef.current;
|
||||
const { component: Component } = extensionManager.getModuleEntry(
|
||||
'@ohif/extension-cornerstone.viewportModule.cornerstone'
|
||||
);
|
||||
|
||||
displaySetOptions.unshift({});
|
||||
const [pmapDisplaySetOptions] = displaySetOptions;
|
||||
|
||||
// Make sure `options` exists
|
||||
pmapDisplaySetOptions.options = pmapDisplaySetOptions.options ?? {};
|
||||
|
||||
Object.assign(pmapDisplaySetOptions.options, {
|
||||
colormap: {
|
||||
name: 'rainbow_2',
|
||||
opacity: [
|
||||
{ value: 0, opacity: 0 },
|
||||
{ value: 0.25, opacity: 0.25 },
|
||||
{ value: 0.5, opacity: 0.5 },
|
||||
{ value: 0.75, opacity: 0.75 },
|
||||
{ value: 0.9, opacity: 0.99 },
|
||||
],
|
||||
},
|
||||
voi: {
|
||||
windowCenter: 50,
|
||||
windowWidth: 100,
|
||||
},
|
||||
});
|
||||
|
||||
uiNotificationService.show({
|
||||
title: 'Parametric Map',
|
||||
type: 'warning',
|
||||
message: 'The values are multiplied by 100 in the viewport for better visibility',
|
||||
});
|
||||
|
||||
return (
|
||||
<Component
|
||||
{...props}
|
||||
// Referenced + PMAP displaySets must be passed as parameter in this order
|
||||
displaySets={[referencedDisplaySet, pmapDisplaySet]}
|
||||
viewportOptions={{
|
||||
viewportType: 'volume',
|
||||
orientation: viewportOptions.orientation,
|
||||
viewportId: viewportOptions.viewportId,
|
||||
}}
|
||||
displaySetOptions={[{}, pmapDisplaySetOptions]}
|
||||
></Component>
|
||||
);
|
||||
}, [
|
||||
extensionManager,
|
||||
displaySetOptions,
|
||||
props,
|
||||
pmapDisplaySet,
|
||||
viewportOptions.orientation,
|
||||
viewportOptions.viewportId,
|
||||
]);
|
||||
|
||||
// Cleanup the PMAP viewport when the viewport is destroyed
|
||||
useEffect(() => {
|
||||
const onDisplaySetsRemovedSubscription = displaySetService.subscribe(
|
||||
displaySetService.EVENTS.DISPLAY_SETS_REMOVED,
|
||||
({ displaySetInstanceUIDs }) => {
|
||||
const activeViewport = viewports.get(activeViewportId);
|
||||
if (displaySetInstanceUIDs.includes(activeViewport.displaySetInstanceUID)) {
|
||||
viewportGridService.setDisplaySetsForViewport({
|
||||
viewportId: activeViewportId,
|
||||
displaySetInstanceUIDs: [],
|
||||
});
|
||||
}
|
||||
}
|
||||
);
|
||||
|
||||
return () => {
|
||||
onDisplaySetsRemovedSubscription.unsubscribe();
|
||||
};
|
||||
}, [activeViewportId, displaySetService, viewportGridService, viewports]);
|
||||
|
||||
let childrenWithProps = null;
|
||||
|
||||
if (children && children.length) {
|
||||
childrenWithProps = children.map((child, index) => {
|
||||
return (
|
||||
child &&
|
||||
React.cloneElement(child, {
|
||||
viewportId,
|
||||
key: index,
|
||||
})
|
||||
);
|
||||
});
|
||||
}
|
||||
|
||||
return (
|
||||
<>
|
||||
<div className="relative flex h-full w-full flex-row overflow-hidden">
|
||||
{pmapIsLoading && (
|
||||
<LoadingIndicatorTotalPercent
|
||||
className="h-full w-full"
|
||||
totalNumbers={null}
|
||||
percentComplete={null}
|
||||
loadingText="Loading Parametric Map..."
|
||||
/>
|
||||
)}
|
||||
{getCornerstoneViewport()}
|
||||
{childrenWithProps}
|
||||
</div>
|
||||
</>
|
||||
);
|
||||
}
|
||||
|
||||
OHIFCornerstonePMAPViewport.propTypes = {
|
||||
displaySets: PropTypes.arrayOf(PropTypes.object),
|
||||
viewportId: PropTypes.string.isRequired,
|
||||
dataSource: PropTypes.object,
|
||||
children: PropTypes.node,
|
||||
};
|
||||
|
||||
function _getReferencedDisplaySetMetadata(referencedDisplaySet, pmapDisplaySet) {
|
||||
const { SharedFunctionalGroupsSequence } = pmapDisplaySet.instance;
|
||||
|
||||
const SharedFunctionalGroup = Array.isArray(SharedFunctionalGroupsSequence)
|
||||
? SharedFunctionalGroupsSequence[0]
|
||||
: SharedFunctionalGroupsSequence;
|
||||
|
||||
const { PixelMeasuresSequence } = SharedFunctionalGroup;
|
||||
|
||||
const PixelMeasures = Array.isArray(PixelMeasuresSequence)
|
||||
? PixelMeasuresSequence[0]
|
||||
: PixelMeasuresSequence;
|
||||
|
||||
const { SpacingBetweenSlices, SliceThickness } = PixelMeasures;
|
||||
|
||||
const image0 = referencedDisplaySet.images[0];
|
||||
const referencedDisplaySetMetadata = {
|
||||
PatientID: image0.PatientID,
|
||||
PatientName: image0.PatientName,
|
||||
PatientSex: image0.PatientSex,
|
||||
PatientAge: image0.PatientAge,
|
||||
SliceThickness: image0.SliceThickness || SliceThickness,
|
||||
StudyDate: image0.StudyDate,
|
||||
SeriesDescription: image0.SeriesDescription,
|
||||
SeriesInstanceUID: image0.SeriesInstanceUID,
|
||||
SeriesNumber: image0.SeriesNumber,
|
||||
ManufacturerModelName: image0.ManufacturerModelName,
|
||||
SpacingBetweenSlices: image0.SpacingBetweenSlices || SpacingBetweenSlices,
|
||||
};
|
||||
|
||||
return referencedDisplaySetMetadata;
|
||||
}
|
||||
|
||||
export default OHIFCornerstonePMAPViewport;
|
||||
Reference in New Issue
Block a user