Initial commit from prod-batam
This commit is contained in:
mario
245
modes/tmtv/src/index.ts
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245
modes/tmtv/src/index.ts
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import { hotkeys, classes } from '@ohif/core';
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import toolbarButtons from './toolbarButtons.js';
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import { id } from './id.js';
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import initToolGroups from './initToolGroups.js';
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import setCrosshairsConfiguration from './utils/setCrosshairsConfiguration.js';
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import setFusionActiveVolume from './utils/setFusionActiveVolume.js';
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import i18n from 'i18next';
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const { MetadataProvider } = classes;
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const ohif = {
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layout: '@ohif/extension-default.layoutTemplateModule.viewerLayout',
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sopClassHandler: '@ohif/extension-default.sopClassHandlerModule.stack',
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thumbnailList: '@ohif/extension-default.panelModule.seriesList',
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};
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const cs3d = {
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viewport: '@ohif/extension-cornerstone.viewportModule.cornerstone',
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segPanel: '@ohif/extension-cornerstone.panelModule.panelSegmentationNoHeader',
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measurements: '@ohif/extension-cornerstone.panelModule.measurements',
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};
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const tmtv = {
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hangingProtocol: '@ohif/extension-tmtv.hangingProtocolModule.ptCT',
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petSUV: '@ohif/extension-tmtv.panelModule.petSUV',
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tmtv: '@ohif/extension-tmtv.panelModule.tmtv',
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};
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const extensionDependencies = {
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// Can derive the versions at least process.env.from npm_package_version
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'@ohif/extension-default': '^3.0.0',
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'@ohif/extension-cornerstone': '^3.0.0',
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'@ohif/extension-cornerstone-dicom-seg': '^3.0.0',
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'@ohif/extension-tmtv': '^3.0.0',
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};
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const unsubscriptions = [];
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function modeFactory({ modeConfiguration }) {
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return {
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// TODO: We're using this as a route segment
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// We should not be.
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id,
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routeName: 'tmtv',
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displayName: i18n.t('Modes:Total Metabolic Tumor Volume'),
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/**
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* Lifecycle hooks
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*/
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onModeEnter: ({ servicesManager, extensionManager, commandsManager }: withAppTypes) => {
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const {
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toolbarService,
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toolGroupService,
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customizationService,
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hangingProtocolService,
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displaySetService,
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} = servicesManager.services;
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const utilityModule = extensionManager.getModuleEntry(
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'@ohif/extension-cornerstone.utilityModule.tools'
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);
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const { toolNames, Enums } = utilityModule.exports;
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// Init Default and SR ToolGroups
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initToolGroups(toolNames, Enums, toolGroupService, commandsManager, null, servicesManager);
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const { unsubscribe } = toolGroupService.subscribe(
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toolGroupService.EVENTS.VIEWPORT_ADDED,
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() => {
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// For fusion toolGroup we need to add the volumeIds for the crosshairs
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// since in the fusion viewport we don't want both PT and CT to render MIP
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// when slabThickness is modified
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const { displaySetMatchDetails } = hangingProtocolService.getMatchDetails();
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setCrosshairsConfiguration(
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displaySetMatchDetails,
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toolNames,
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toolGroupService,
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displaySetService
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);
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setFusionActiveVolume(
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displaySetMatchDetails,
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toolNames,
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toolGroupService,
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displaySetService
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);
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}
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);
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unsubscriptions.push(unsubscribe);
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toolbarService.addButtons(toolbarButtons);
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toolbarService.createButtonSection('primary', [
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'MeasurementTools',
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'Zoom',
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'WindowLevel',
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'Crosshairs',
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'Pan',
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]);
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toolbarService.createButtonSection('ROIThresholdToolbox', [
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'RectangleROIStartEndThreshold',
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'BrushTools',
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]);
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customizationService.addModeCustomizations([
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{
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id: 'PanelSegmentation.tableMode',
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mode: 'expanded',
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},
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{
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id: 'PanelSegmentation.onSegmentationAdd',
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onSegmentationAdd: () => {
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commandsManager.run('createNewLabelmapFromPT');
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},
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},
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{
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id: 'PanelSegmentation.readableText',
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// remove following if you are not interested in that stats
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readableText: {
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lesionStats: 'Lesion Statistics',
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minValue: 'Minimum Value',
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maxValue: 'Maximum Value',
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meanValue: 'Mean Value',
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volume: 'Volume',
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suvPeak: 'SUV Peak',
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suvMax: 'Maximum SUV',
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suvMaxIJK: 'SUV Max IJK',
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lesionGlyoclysisStats: 'Lesion Glycolysis',
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},
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},
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]);
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// For the hanging protocol we need to decide on the window level
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// based on whether the SUV is corrected or not, hence we can't hard
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// code the window level in the hanging protocol but we add a custom
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// attribute to the hanging protocol that will be used to get the
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// window level based on the metadata
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hangingProtocolService.addCustomAttribute(
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'getPTVOIRange',
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'get PT VOI based on corrected or not',
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props => {
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const ptDisplaySet = props.find(imageSet => imageSet.Modality === 'PT');
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if (!ptDisplaySet) {
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return;
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}
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const { imageId } = ptDisplaySet.images[0];
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const imageIdScalingFactor = MetadataProvider.get('scalingModule', imageId);
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const isSUVAvailable = imageIdScalingFactor && imageIdScalingFactor.suvbw;
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if (isSUVAvailable) {
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return {
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windowWidth: 5,
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windowCenter: 2.5,
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};
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}
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return;
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}
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);
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},
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onModeExit: ({ servicesManager }: withAppTypes) => {
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const {
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toolGroupService,
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syncGroupService,
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segmentationService,
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cornerstoneViewportService,
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uiDialogService,
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uiModalService,
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} = servicesManager.services;
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unsubscriptions.forEach(unsubscribe => unsubscribe());
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uiDialogService.dismissAll();
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uiModalService.hide();
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toolGroupService.destroy();
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syncGroupService.destroy();
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segmentationService.destroy();
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cornerstoneViewportService.destroy();
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},
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validationTags: {
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study: [],
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series: [],
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},
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isValidMode: ({ modalities, study }) => {
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const modalities_list = modalities.split('\\');
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const invalidModalities = ['SM'];
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const isValid =
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modalities_list.includes('CT') &&
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study.mrn !== 'M1' &&
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modalities_list.includes('PT') &&
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!invalidModalities.some(modality => modalities_list.includes(modality)) &&
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// This is study is a 4D study with PT and CT and not a 3D study for the tmtv
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// mode, until we have a better way to identify 4D studies we will use the
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// StudyInstanceUID to identify the study
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// Todo: when we add the 4D mode which comes with a mechanism to identify
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// 4D studies we can use that
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study.studyInstanceUid !== '1.3.6.1.4.1.12842.1.1.14.3.20220915.105557.468.2963630849';
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// there should be both CT and PT modalities and the modality should not be SM
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return {
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valid: isValid,
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description: 'The mode requires both PT and CT series in the study',
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};
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},
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routes: [
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{
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path: 'tmtv',
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/*init: ({ servicesManager, extensionManager }) => {
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//defaultViewerRouteInit
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},*/
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layoutTemplate: () => {
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return {
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id: ohif.layout,
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props: {
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leftPanels: [ohif.thumbnailList],
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leftPanelClosed: true,
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rightPanels: [tmtv.tmtv, tmtv.petSUV],
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viewports: [
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{
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namespace: cs3d.viewport,
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displaySetsToDisplay: [ohif.sopClassHandler],
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},
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],
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},
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};
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},
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},
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],
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extensions: extensionDependencies,
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hangingProtocol: tmtv.hangingProtocol,
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sopClassHandlers: [ohif.sopClassHandler],
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hotkeys: [...hotkeys.defaults.hotkeyBindings],
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...modeConfiguration,
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};
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}
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const mode = {
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id,
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modeFactory,
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extensionDependencies,
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};
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export default mode;
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